Variant report

Variant	rs7641162
Chromosome Location	chr3:133939270-133939271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133938047..133940446-chr3:133968199..133970600,2	K562	blood:
2	chr3:133934428..133936784-chr3:133937861..133939998,2	MCF-7	breast:
3	chr3:133937201..133939417-chr3:133942858..133944419,2	K562	blood:
4	chr3:133933583..133935270-chr3:133937185..133939299,2	K562	blood:

Variant related genes	Relation type
ENSG00000163785	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10935104	0.88[ASN][1000 genomes]
rs12635994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13068409	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13099506	0.91[ASN][1000 genomes]
rs28514329	0.94[ASN][1000 genomes]
rs35015318	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35111284	0.95[ASN][1000 genomes]
rs35775034	0.87[ASN][1000 genomes]
rs4077158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4077643	0.95[ASN][1000 genomes]
rs4280635	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4404422	0.95[ASN][1000 genomes]
rs6439464	0.89[ASN][1000 genomes]
rs6439469	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67022177	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6783086	0.95[ASN][1000 genomes]
rs6783294	0.93[ASN][1000 genomes]
rs6786384	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6795164	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6796404	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6804370	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73215351	0.84[ASN][1000 genomes]
rs7429840	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7620941	0.81[ASN][1000 genomes]
rs7623609	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7639683	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9809556	0.95[ASN][1000 genomes]
rs9822076	0.89[ASN][1000 genomes]
rs9822469	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9822749	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9829505	0.93[ASN][1000 genomes]
rs9839609	0.95[ASN][1000 genomes]
rs9846664	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9846871	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9858000	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9859680	0.94[ASN][1000 genomes]
rs9860060	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9860268	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9865808	0.95[ASN][1000 genomes]
rs9877899	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9880098	0.95[ASN][1000 genomes]
rs9881896	0.93[ASN][1000 genomes]
rs9882168	0.91[ASN][1000 genomes]
rs9882590	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9882927	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
2	chr3:133894800-133946800	Weak transcription	Pancreas	Pancrea
3	chr3:133895000-133950000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:133895000-133950200	Weak transcription	Gastric	stomach
5	chr3:133895600-133942800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:133909200-133943000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:133919000-133950600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:133919400-133943000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:133919800-133940200	Weak transcription	Esophagus	oesophagus
10	chr3:133920000-133940200	Weak transcription	Fetal Intestine Small	intestine
11	chr3:133920600-133940600	Weak transcription	A549	lung
12	chr3:133920800-133940600	Weak transcription	Thymus	Thymus
13	chr3:133920800-133950200	Weak transcription	Aorta	Aorta
14	chr3:133920800-133950200	Weak transcription	Spleen	Spleen
15	chr3:133920800-133950600	Weak transcription	Hela-S3	cervix
16	chr3:133921600-133941800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:133921800-133943000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:133924600-133941800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:133928600-133949400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr3:133930000-133942400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr3:133930000-133950000	Weak transcription	NHDF-Ad	bronchial
22	chr3:133930000-133950400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:133930000-133954600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:133930200-133939800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:133930200-133940600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:133930200-133941400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:133930200-133941600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr3:133930200-133941800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:133930200-133941800	Weak transcription	NH-A	brain
30	chr3:133930200-133942600	Weak transcription	Fetal Thymus	thymus
31	chr3:133930200-133942800	Weak transcription	Left Ventricle	heart
32	chr3:133930200-133946400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:133930200-133950000	Weak transcription	HSMM	muscle
34	chr3:133930200-133950200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr3:133930200-133950600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:133930200-133955000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr3:133930200-133968000	Weak transcription	Fetal Kidney	kidney
38	chr3:133930400-133940200	Weak transcription	Brain Germinal Matrix	brain
39	chr3:133930400-133940400	Weak transcription	Placenta	Placenta
40	chr3:133930400-133940600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr3:133930400-133940600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:133930400-133940600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr3:133930400-133940600	Weak transcription	Liver	Liver
44	chr3:133930400-133941000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:133930400-133941800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:133930400-133942400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:133930400-133942600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr3:133930400-133942600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:133930400-133942600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:133930400-133942600	Weak transcription	Rectal Mucosa Donor 31	rectum

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