Variant report

Variant	rs6804370
Chromosome Location	chr3:133981842-133981843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10935104	0.86[ASN][1000 genomes]
rs12635994	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13068409	0.85[ASN][1000 genomes]
rs13099506	0.89[ASN][1000 genomes]
rs28514329	0.92[ASN][1000 genomes]
rs35015318	0.83[AMR][1000 genomes]
rs35111284	0.93[ASN][1000 genomes]
rs35775034	0.84[ASN][1000 genomes]
rs4077158	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4077643	0.93[ASN][1000 genomes]
rs4280635	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4404422	0.93[ASN][1000 genomes]
rs6439464	0.86[ASN][1000 genomes]
rs6439469	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67022177	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6783086	0.93[ASN][1000 genomes]
rs6783294	0.91[ASN][1000 genomes]
rs6786384	0.82[ASN][1000 genomes]
rs6795164	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6796404	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73215351	0.82[ASN][1000 genomes]
rs7429840	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7623609	0.89[ASN][1000 genomes]
rs7639683	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7641162	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9809556	0.93[ASN][1000 genomes]
rs9822076	0.86[ASN][1000 genomes]
rs9822469	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9822749	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9829505	0.91[ASN][1000 genomes]
rs9839609	0.93[ASN][1000 genomes]
rs9846664	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9846871	0.84[AMR][1000 genomes]
rs9858000	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9859680	0.92[ASN][1000 genomes]
rs9865808	0.93[ASN][1000 genomes]
rs9880098	0.93[ASN][1000 genomes]
rs9881896	0.91[ASN][1000 genomes]
rs9882168	0.89[ASN][1000 genomes]
rs9882590	0.85[ASN][1000 genomes]
rs9882927	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133980400-133985400	Weak transcription	HepG2	liver
2	chr3:133981000-133987000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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