Variant report
| Variant | rs9285651 |
|---|---|
| Chromosome Location | chr5:154459233-154459234 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10038694 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10038971 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10050521 | 0.82[AFR][1000 genomes] |
| rs1005789 | 0.82[AFR][1000 genomes] |
| rs1008795 | 0.86[AFR][1000 genomes] |
| rs11167708 | 0.85[CEU][hapmap] |
| rs12153386 | 0.84[CEU][hapmap] |
| rs12519670 | 0.85[CEU][hapmap] |
| rs13155597 | 0.86[JPT][hapmap] |
| rs1319694 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17572520 | 0.81[JPT][hapmap] |
| rs34021636 | 0.86[EUR][1000 genomes] |
| rs6868742 | 0.85[CEU][hapmap] |
| rs6868904 | 0.85[CEU][hapmap] |
| rs6890098 | 0.84[CEU][hapmap] |
| rs6890664 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6898774 | 0.85[CEU][hapmap] |
| rs7703759 | 0.82[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs9324802 | 0.87[EUR][1000 genomes] |
| rs9324804 | 0.86[AFR][1000 genomes] |
| rs9324805 | 0.86[AFR][1000 genomes] |
| rs988435 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs991314 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023588 | chr5:154415586-154464455 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 2 | nsv883059 | chr5:154457905-154556230 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:154457000-154459800 | Weak transcription | Fetal Heart | heart |
