Variant report

Variant	rs9324805
Chromosome Location	chr5:154488081-154488082
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037186	0.84[ASN][1000 genomes]
rs10038694	0.87[AFR][1000 genomes]
rs10038971	0.86[AFR][1000 genomes]
rs10050521	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10050836	0.82[ASN][1000 genomes]
rs1005789	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10066196	0.82[ASN][1000 genomes]
rs10066219	0.82[ASN][1000 genomes]
rs10066223	0.82[ASN][1000 genomes]
rs10078699	0.88[ASN][1000 genomes]
rs1008795	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10476812	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11167712	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13155597	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1319694	0.86[AFR][1000 genomes]
rs1564885	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17573136	0.87[ASN][1000 genomes]
rs35161960	0.84[ASN][1000 genomes]
rs4958779	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6580136	0.82[ASN][1000 genomes]
rs6890664	0.85[AFR][1000 genomes]
rs6897414	0.93[ASN][1000 genomes]
rs7703459	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7703759	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9285651	0.86[AFR][1000 genomes]
rs9324804	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988435	0.85[AFR][1000 genomes]
rs991314	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv274987	chr5:154487590-154489402	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154486800-154489800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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