Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr5:154495977-154496320	HepG2	liver:	n/a	chr5:154496177-154496192 chr5:154496179-154496192 chr5:154496179-154496192 chr5:154496179-154496192 chr5:154496177-154496192 chr5:154496178-154496191 chr5:154496179-154496191 chr5:154496177-154496192 chr5:154496176-154496194 chr5:154496179-154496191 chr5:154496178-154496186 chr5:154496179-154496191 chr5:154496177-154496192 chr5:154496179-154496191
2	GATA3	chr5:154495927-154497013	T-47D	breast:	n/a	n/a
3	ESR1	chr5:154495969-154496967	T-47D	breast:	n/a	n/a
4	ESR1	chr5:154495963-154496905	T-47D	breast:	n/a	n/a
5	EP300	chr5:154495955-154496979	T-47D	breast:	n/a	n/a
6	FOXA1	chr5:154495986-154497114	T-47D	breast:	n/a	n/a
7	HNF4G	chr5:154495925-154496378	HepG2	liver:	n/a	chr5:154496177-154496192 chr5:154496179-154496192 chr5:154496179-154496192 chr5:154496179-154496192 chr5:154496177-154496192 chr5:154496178-154496191 chr5:154496179-154496191 chr5:154496176-154496194 chr5:154496179-154496191 chr5:154496178-154496186 chr5:154496178-154496193 chr5:154496179-154496191 chr5:154496177-154496192 chr5:154496179-154496191
8	ESR1	chr5:154495965-154496924	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000253646	TF binding region

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10035182	0.83[ASN][1000 genomes]
rs10050521	0.89[ASN][1000 genomes]
rs1005789	0.88[ASN][1000 genomes]
rs10060354	0.86[ASN][1000 genomes]
rs10076907	0.86[ASN][1000 genomes]
rs10078699	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1008795	0.88[ASN][1000 genomes]
rs10476812	0.89[ASN][1000 genomes]
rs10476814	0.87[ASN][1000 genomes]
rs11167712	0.89[ASN][1000 genomes]
rs13155597	0.89[ASN][1000 genomes]
rs1549647	0.86[ASN][1000 genomes]
rs1549648	0.86[ASN][1000 genomes]
rs1564885	0.83[ASN][1000 genomes]
rs17572520	0.88[ASN][1000 genomes]
rs17573136	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2081965	0.88[ASN][1000 genomes]
rs2081966	0.84[ASN][1000 genomes]
rs35161960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35479770	0.88[ASN][1000 genomes]
rs35656480	0.87[ASN][1000 genomes]
rs4958779	0.87[ASN][1000 genomes]
rs55957739	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6897414	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7702812	0.82[ASN][1000 genomes]
rs7703459	0.88[ASN][1000 genomes]
rs7703759	0.87[ASN][1000 genomes]
rs9324804	0.84[ASN][1000 genomes]
rs9324805	0.84[ASN][1000 genomes]
rs961812	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154495400-154496800	Enhancers	HepG2	liver
2	chr5:154495800-154496800	Enhancers	Placenta Amnion	Placenta Amnion

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