Variant report
| Variant | rs6897414 |
|---|---|
| Chromosome Location | chr5:154488947-154488948 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:154485065..154487069-chr5:154488163..154490065,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10037186 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10050521 | 0.95[ASN][1000 genomes] |
| rs10050836 | 0.82[ASN][1000 genomes] |
| rs1005789 | 0.94[ASN][1000 genomes] |
| rs10066196 | 0.82[ASN][1000 genomes] |
| rs10066219 | 0.82[ASN][1000 genomes] |
| rs10066223 | 0.82[ASN][1000 genomes] |
| rs10078699 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1008795 | 0.97[ASN][1000 genomes] |
| rs10476812 | 0.95[ASN][1000 genomes] |
| rs11167712 | 0.95[ASN][1000 genomes] |
| rs13155597 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1564885 | 0.88[ASN][1000 genomes] |
| rs17572520 | 0.90[JPT][hapmap] |
| rs17573136 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs35161960 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4958779 | 0.96[ASN][1000 genomes] |
| rs6580136 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7703459 | 0.94[ASN][1000 genomes] |
| rs7703759 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs9324804 | 0.93[ASN][1000 genomes] |
| rs9324805 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883059 | chr5:154457905-154556230 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv274987 | chr5:154487590-154489402 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6897414 | MFAP3 | cis | cerebellum | SCAN |
| rs6897414 | ANXA6 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:154486800-154489800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
