Variant report

Variant	rs10066223
Chromosome Location	chr5:154499047-154499048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIF4B-1	chr5:154498995-154499314	NONHSAT104729
2	lnc-KIF4B-1	chr5:154498161-154499170	NONHSAT104728

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10035182	0.84[ASN][1000 genomes]
rs10050521	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10050836	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1005789	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10060354	0.87[ASN][1000 genomes]
rs10066196	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076907	0.87[ASN][1000 genomes]
rs10078699	0.83[ASN][1000 genomes]
rs1008795	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10476812	0.88[ASN][1000 genomes]
rs10476814	0.88[ASN][1000 genomes]
rs11167712	0.88[ASN][1000 genomes]
rs13155597	0.83[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1549647	0.87[ASN][1000 genomes]
rs1549648	0.87[ASN][1000 genomes]
rs1564885	0.83[ASN][1000 genomes]
rs17572520	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs17573136	0.82[ASN][1000 genomes]
rs2081965	0.89[ASN][1000 genomes]
rs2081966	0.88[ASN][1000 genomes]
rs35479770	0.89[ASN][1000 genomes]
rs35656480	0.88[ASN][1000 genomes]
rs4958779	0.86[ASN][1000 genomes]
rs55957739	0.89[ASN][1000 genomes]
rs6580136	0.96[ASN][1000 genomes]
rs6897414	0.82[ASN][1000 genomes]
rs7702812	0.83[ASN][1000 genomes]
rs7703459	0.87[ASN][1000 genomes]
rs7703759	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9324804	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9324805	0.82[ASN][1000 genomes]
rs961812	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10066223	ANXA6	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links