Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154460850..154462591-chr5:154465930..154468582,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10038694	0.83[EUR][1000 genomes]
rs10223164	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11167708	0.89[EUR][1000 genomes]
rs11167709	0.89[EUR][1000 genomes]
rs11167711	0.83[EUR][1000 genomes]
rs12153386	0.89[EUR][1000 genomes]
rs12187210	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12188764	0.88[EUR][1000 genomes]
rs12188773	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12519670	0.89[EUR][1000 genomes]
rs34121599	0.88[EUR][1000 genomes]
rs35235180	0.88[EUR][1000 genomes]
rs4958396	0.89[EUR][1000 genomes]
rs4958776	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4958780	0.89[EUR][1000 genomes]
rs6868742	0.89[EUR][1000 genomes]
rs6868904	0.89[EUR][1000 genomes]
rs6890088	0.89[EUR][1000 genomes]
rs6890098	0.89[EUR][1000 genomes]
rs6890664	0.84[EUR][1000 genomes]
rs6898774	0.89[EUR][1000 genomes]
rs9285651	0.86[EUR][1000 genomes]
rs9324802	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9324803	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs988435	0.85[EUR][1000 genomes]
rs991314	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154459600-154462200	Enhancers	NHEK	skin
2	chr5:154459600-154462600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:154459800-154461600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:154460000-154462000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:154460400-154462600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:154460400-154462600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:154460400-154462600	Enhancers	NH-A	brain
8	chr5:154460400-154462800	Enhancers	HMEC	breast
9	chr5:154460600-154461600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:154460800-154462000	Weak transcription	HSMMtube	muscle
11	chr5:154460800-154462600	Enhancers	Placenta Amnion	Placenta Amnion
12	chr5:154461000-154461400	Weak transcription	HSMM	muscle
13	chr5:154461000-154461400	Weak transcription	HUVEC	blood vessel
14	chr5:154461000-154464600	Weak transcription	Fetal Stomach	stomach
15	chr5:154461000-154466600	Weak transcription	Fetal Heart	heart
16	chr5:154461200-154462600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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