Variant report
| Variant | rs4958776 |
|---|---|
| Chromosome Location | chr5:154458324-154458325 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:154387175..154388944-chr5:154456600..154458958,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10039301 | 0.90[ASN][1000 genomes] |
| rs10042611 | 0.90[ASN][1000 genomes] |
| rs10223164 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1026974 | 0.90[ASN][1000 genomes] |
| rs11167709 | 0.95[ASN][1000 genomes] |
| rs11167711 | 0.95[ASN][1000 genomes] |
| rs12188764 | 0.95[ASN][1000 genomes] |
| rs12513733 | 0.90[ASN][1000 genomes] |
| rs12517423 | 0.90[ASN][1000 genomes] |
| rs12519696 | 0.90[ASN][1000 genomes] |
| rs28482784 | 0.90[ASN][1000 genomes] |
| rs34021636 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs35025199 | 0.90[ASN][1000 genomes] |
| rs36173047 | 0.81[ASN][1000 genomes] |
| rs4958396 | 0.95[ASN][1000 genomes] |
| rs9324802 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9324803 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023588 | chr5:154415586-154464455 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 2 | nsv883059 | chr5:154457905-154556230 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:154457000-154459800 | Weak transcription | Fetal Heart | heart |
