Variant report

Variant	rs12513733
Chromosome Location	chr5:154463352-154463353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10039301	1.00[ASN][1000 genomes]
rs10042611	1.00[ASN][1000 genomes]
rs10223164	0.90[ASN][1000 genomes]
rs1026974	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11167709	0.86[ASN][1000 genomes]
rs11167711	0.86[ASN][1000 genomes]
rs12188764	0.86[ASN][1000 genomes]
rs12513810	0.83[EUR][1000 genomes]
rs12517423	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519670	1.00[JPT][hapmap]
rs12519696	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28482784	1.00[ASN][1000 genomes]
rs35025199	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36173047	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4958396	0.86[ASN][1000 genomes]
rs4958776	0.90[ASN][1000 genomes]
rs60802793	0.83[EUR][1000 genomes]
rs6898774	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154461000-154464600	Weak transcription	Fetal Stomach	stomach
2	chr5:154461000-154466600	Weak transcription	Fetal Heart	heart
3	chr5:154462200-154474400	Weak transcription	Right Ventricle	heart
4	chr5:154462400-154466600	Weak transcription	HSMMtube	muscle
5	chr5:154462600-154463800	Weak transcription	HUVEC	blood vessel
6	chr5:154462600-154464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:154462600-154464200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:154462600-154464400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:154462600-154464800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:154462800-154463800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:154462800-154468000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:154463200-154464000	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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