Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154387175..154388944-chr5:154456600..154458958,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10039301	0.90[ASN][1000 genomes]
rs10042611	0.90[ASN][1000 genomes]
rs1026974	0.90[ASN][1000 genomes]
rs11167708	0.94[CEU][hapmap]
rs11167709	0.95[ASN][1000 genomes]
rs11167711	0.95[ASN][1000 genomes]
rs12153386	0.94[CEU][hapmap]
rs12188764	0.95[ASN][1000 genomes]
rs12513733	0.90[ASN][1000 genomes]
rs12517423	0.90[ASN][1000 genomes]
rs12519670	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs12519696	0.90[ASN][1000 genomes]
rs28482784	0.90[ASN][1000 genomes]
rs34021636	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35025199	0.90[ASN][1000 genomes]
rs36173047	0.81[ASN][1000 genomes]
rs4958396	0.95[ASN][1000 genomes]
rs4958776	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868742	0.94[CEU][hapmap]
rs6868904	0.94[CEU][hapmap]
rs6890098	0.94[CEU][hapmap]
rs6898774	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs9324802	0.87[EUR][1000 genomes]
rs9324803	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10223164	MED7	cis	parietal	SCAN
rs10223164	SGCD	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154455800-154457000	Enhancers	Fetal Heart	heart

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