Variant report

Variant	rs4958396
Chromosome Location	chr5:154495468-154495469
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10039301	0.86[ASN][1000 genomes]
rs10042611	0.86[ASN][1000 genomes]
rs10223164	0.95[ASN][1000 genomes]
rs1026974	0.86[ASN][1000 genomes]
rs11167708	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11167709	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11167711	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153378	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12153386	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12187210	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12188764	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188773	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12513733	0.86[ASN][1000 genomes]
rs12517423	0.86[ASN][1000 genomes]
rs12519670	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12519696	0.86[ASN][1000 genomes]
rs28482784	0.86[ASN][1000 genomes]
rs34021636	0.89[EUR][1000 genomes]
rs34121599	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35025199	0.86[ASN][1000 genomes]
rs35235180	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4958776	0.95[ASN][1000 genomes]
rs4958780	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6868742	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6868904	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6890088	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6890098	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6898774	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9324802	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154492200-154495800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:154495200-154495600	Bivalent/Poised TSS	A549	lung
3	chr5:154495400-154496800	Enhancers	HepG2	liver

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