Variant report

Variant	rs10042611
Chromosome Location	chr5:154456294-154456295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10039301	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10223164	0.90[ASN][1000 genomes]
rs1026974	1.00[ASN][1000 genomes]
rs11167709	0.86[ASN][1000 genomes]
rs11167711	0.86[ASN][1000 genomes]
rs12188764	0.86[ASN][1000 genomes]
rs12513733	1.00[ASN][1000 genomes]
rs12517423	1.00[ASN][1000 genomes]
rs12519670	1.00[JPT][hapmap]
rs12519696	1.00[ASN][1000 genomes]
rs28482784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35025199	1.00[ASN][1000 genomes]
rs36173047	0.90[ASN][1000 genomes]
rs4958396	0.86[ASN][1000 genomes]
rs4958776	0.90[ASN][1000 genomes]
rs6898774	1.00[JPT][hapmap]
rs7720827	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154454600-154456800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:154455800-154457000	Enhancers	Fetal Heart	heart
3	chr5:154456200-154456600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:154456200-154456600	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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