Variant report

Variant	rs7720827
Chromosome Location	chr5:154496905-154496906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10039301	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10042611	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11167708	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12153378	0.88[ASN][1000 genomes]
rs12153386	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12187210	0.85[ASN][1000 genomes]
rs12188773	0.85[ASN][1000 genomes]
rs12519670	0.88[ASN][1000 genomes]
rs28482784	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34121599	0.88[ASN][1000 genomes]
rs35235180	0.88[ASN][1000 genomes]
rs4958780	0.88[ASN][1000 genomes]
rs6868742	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6868904	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6890088	0.88[ASN][1000 genomes]
rs6890098	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6898774	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9324803	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154496600-154498400	Weak transcription	Fetal Heart	heart
2	chr5:154496800-154497000	Active TSS	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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