Variant report

Variant	rs9294890
Chromosome Location	chr6:71967012-71967013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71953923..71956833-chr6:71966030..71968468,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs41265361	0.83[EUR][1000 genomes]
rs41265363	0.83[EUR][1000 genomes]
rs55722044	0.83[EUR][1000 genomes]
rs7747357	0.83[EUR][1000 genomes]
rs9294894	0.83[EUR][1000 genomes]
rs9294896	0.83[EUR][1000 genomes]
rs9294897	0.83[EUR][1000 genomes]
rs9294898	0.83[EUR][1000 genomes]
rs9446362	0.83[EUR][1000 genomes]
rs9446363	0.83[EUR][1000 genomes]
rs9446365	0.83[EUR][1000 genomes]
rs9455404	0.83[EUR][1000 genomes]
rs9455405	0.83[EUR][1000 genomes]
rs9455406	0.83[EUR][1000 genomes]
rs9455408	0.83[EUR][1000 genomes]
rs9455412	0.83[EUR][1000 genomes]
rs9455422	0.83[EUR][1000 genomes]
rs9455423	0.83[EUR][1000 genomes]
rs9455424	0.83[EUR][1000 genomes]
rs9455425	0.83[EUR][1000 genomes]
rs9455426	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763953	chr6:71954956-71968035	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71955600-71972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71959800-71967800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:71963800-71967600	Weak transcription	Aorta	Aorta
4	chr6:71963800-71968400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:71964000-71967200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:71964000-71968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:71964400-71967600	Weak transcription	Brain Angular Gyrus	brain
8	chr6:71964400-71967600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:71964400-71967600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:71964400-71967600	Weak transcription	NHDF-Ad	bronchial
11	chr6:71964400-71967800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:71964400-71967800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:71964400-71967800	Weak transcription	Placenta	Placenta
14	chr6:71964600-71967800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:71964800-71967600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:71965200-71968000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:71966600-71968800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:71966800-71968200	Enhancers	Brain Anterior Caudate	brain
19	chr6:71966800-71968800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:71967000-71967200	Enhancers	Right Ventricle	heart
21	chr6:71967000-71968400	Enhancers	Adipose Nuclei	Adipose

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