Variant report

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28167517..28171168-chr6:28177888..28180588,3	K562	blood:
2	chr6:28078804..28081627-chr6:28178928..28180967,2	K562	blood:
3	chr6:28122889..28124668-chr6:28176710..28180566,3	K562	blood:
4	chr6:28177601..28182191-chr6:28315411..28319291,5	K562	blood:
5	chr6:28128639..28130932-chr6:28178698..28181130,2	K562	blood:
6	chr6:28103936..28106419-chr6:28177015..28179334,3	MCF-7	breast:
7	chr6:27856295..27859168-chr6:28179121..28180729,2	K562	blood:
8	chr6:28104315..28106178-chr6:28177345..28180593,3	MCF-7	breast:
9	chr6:28179220..28181310-chr6:28303360..28306255,2	MCF-7	breast:
10	chr6:28108322..28111152-chr6:28178112..28181694,4	K562	blood:
11	chr6:28178232..28180361-chr6:28366158..28368738,2	K562	blood:
12	chr6:28178129..28180295-chr6:28233395..28236371,2	K562	blood:
13	chr6:28103775..28107091-chr6:28177064..28180460,3	K562	blood:
14	chr6:28151155..28153263-chr6:28178363..28180275,2	K562	blood:
15	chr6:28178359..28182415-chr6:28302345..28306363,5	K562	blood:
16	chr6:28103775..28113920-chr6:28177995..28190115,32	K562	blood:
17	chr6:27864015..27866427-chr6:28176005..28180203,3	K562	blood:
18	chr6:28126773..28130386-chr6:28178914..28182864,4	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11755032	0.82[ASN][1000 genomes]
rs1339899	0.81[ASN][1000 genomes]
rs13437126	0.95[EUR][1000 genomes]
rs16893735	0.95[EUR][1000 genomes]
rs1778507	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734571	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4713138	0.95[EUR][1000 genomes]
rs61127718	0.81[AMR][1000 genomes]
rs6920512	0.84[ASN][1000 genomes]
rs9295765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357064	0.95[EUR][1000 genomes]
rs9366717	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9393889	0.95[EUR][1000 genomes]
rs9393902	0.95[EUR][1000 genomes]
rs9393908	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9461439	0.95[EUR][1000 genomes]
rs9461446	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9461448	0.82[ASN][1000 genomes]
rs9461449	0.82[ASN][1000 genomes]
rs9468301	0.95[EUR][1000 genomes]
rs9468321	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468322	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468325	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883514	chr6:28155418-28185726	Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv883515	chr6:28156476-28181675	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv883516	chr6:28156476-28185726	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9295766	RP1-313I6.12	cis	Thyroid	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28178200-28179400	Weak transcription	HMEC	breast
2	chr6:28178200-28179600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:28178200-28179600	Weak transcription	NHEK	skin
4	chr6:28178400-28180000	Weak transcription	HSMMtube	muscle
5	chr6:28178600-28180000	Weak transcription	Pancreas	Pancrea
6	chr6:28179200-28179600	Bivalent Enhancer	HepG2	liver
7	chr6:28179200-28179600	Flanking Active TSS	K562	blood
8	chr6:28179200-28180200	Bivalent Enhancer	Placenta	Placenta

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