Variant report

Variant	rs9468301
Chromosome Location	chr6:28143857-28143858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27858835..27861043-chr6:28141226..28144128,2	K562	blood:
2	chr6:28143030..28145517-chr6:28186267..28188999,2	K562	blood:

Variant related genes	Relation type
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000176933	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12055625	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1321504	0.82[ASN][1000 genomes]
rs1321505	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13437126	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13437444	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16893735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778507	0.95[EUR][1000 genomes]
rs34130214	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34712084	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3734571	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3757188	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4713138	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713139	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4713140	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs735765	0.93[ASN][1000 genomes]
rs8180562	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9295765	0.95[EUR][1000 genomes]
rs9295766	0.95[EUR][1000 genomes]
rs9295767	0.95[EUR][1000 genomes]
rs9348792	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9357064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9368560	0.90[ASN][1000 genomes]
rs9368561	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9380064	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9393889	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461432	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9461439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461446	0.95[EUR][1000 genomes]
rs9468287	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9468300	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9468321	0.95[EUR][1000 genomes]
rs9468322	0.95[EUR][1000 genomes]
rs9468325	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384757	chr6:28143357-28145067	Weak transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3427454	chr6:28143815-28144193	Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28129800-28145400	Weak transcription	Brain Angular Gyrus	brain
2	chr6:28138000-28145600	Weak transcription	K562	blood
3	chr6:28139000-28144400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:28139400-28145600	Weak transcription	Brain Inferior Temporal Lobe	brain

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