Variant report

Variant	rs34712084
Chromosome Location	chr6:28043828-28043829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28042414..28044265-chr6:28350613..28353294,2	K562	blood:
2	chr6:28043259..28045673-chr6:28049244..28050877,2	K562	blood:
3	chr6:28042824..28044940-chr6:28104106..28105733,2	K562	blood:

Variant related genes	Relation type
ENSG00000261839	Chromatin interaction
ENSG00000269293	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12055625	0.85[ASN][1000 genomes]
rs1321504	0.85[ASN][1000 genomes]
rs1321505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437126	1.00[ASN][1000 genomes]
rs13437444	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16893735	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34130214	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734571	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3757188	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713138	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4713139	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713140	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735765	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8180562	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9348792	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9357064	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9366717	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9368560	0.90[ASN][1000 genomes]
rs9368561	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380064	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9380069	0.80[EUR][1000 genomes]
rs9393889	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9393902	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9393908	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9461432	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461439	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9468287	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468300	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9468301	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs34712084	AL022393.7	cis	Muscle Skeletal	GTEx
rs34712084	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs34712084	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28042600-28046600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:28043200-28047800	Weak transcription	Spleen	Spleen

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