Variant report
| Variant | rs9348792 |
|---|---|
| Chromosome Location | chr6:28042274-28042275 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28040138..28042745-chr6:28048469..28050463,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272009 | Chromatin interaction |
| ENSG00000197279 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1321505 | 0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13437126 | 0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13437444 | 0.91[ASN][1000 genomes] |
| rs16893735 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34130214 | 0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34712084 | 0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3734571 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3757188 | 0.94[ASN][1000 genomes] |
| rs4713138 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4713139 | 0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4713140 | 0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs735765 | 0.87[ASN][1000 genomes] |
| rs8180562 | 0.80[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9357064 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9368560 | 0.85[ASN][1000 genomes] |
| rs9368561 | 0.80[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9380064 | 0.80[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9393882 | 0.83[AMR][1000 genomes] |
| rs9393889 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9393902 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9461432 | 0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9461439 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9468287 | 0.80[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9468300 | 0.80[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9468301 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830619 | chr6:27872302-28062544 | Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
