Variant report

Variant	rs9357064
Chromosome Location	chr6:28112842-28112843
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28103775..28113920-chr6:28177995..28190115,32	K562	blood:
2	chr6:28077736..28080081-chr6:28112119..28113939,2	K562	blood:
3	chr6:28112424..28114351-chr6:28312409..28315217,2	K562	blood:
4	chr6:27860855..27863824-chr6:28111543..28113437,2	K562	blood:
5	chr6:28086053..28088186-chr6:28111853..28113998,2	MCF-7	breast:
6	chr6:28108554..28111385-chr6:28111459..28116285,4	MCF-7	breast:
7	chr6:28108043..28113786-chr6:28190485..28194607,10	K562	blood:
8	chr6:27791848..27794229-chr6:28109901..28113080,3	K562	blood:
9	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:

No data

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000176933	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12055625	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1321504	0.81[ASN][1000 genomes]
rs1321505	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13437126	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13437444	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs16893735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1778507	0.95[EUR][1000 genomes]
rs34130214	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34712084	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3734571	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3757188	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4713138	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713139	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4713140	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs735765	0.89[ASN][1000 genomes]
rs8180562	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9295765	0.95[EUR][1000 genomes]
rs9295766	0.95[EUR][1000 genomes]
rs9295767	0.95[EUR][1000 genomes]
rs9348792	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9368560	0.86[ASN][1000 genomes]
rs9368561	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9380064	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9393889	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9393902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461432	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9461439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461446	0.95[EUR][1000 genomes]
rs9468287	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9468300	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9468301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9468321	0.95[EUR][1000 genomes]
rs9468322	0.95[EUR][1000 genomes]
rs9468325	0.95[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28110000-28116200	Weak transcription	Spleen	Spleen
2	chr6:28110200-28113000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:28110200-28115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:28110200-28115800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:28110200-28116000	Weak transcription	Lung	lung
6	chr6:28110200-28116200	Weak transcription	Esophagus	oesophagus
7	chr6:28110200-28116200	Weak transcription	Gastric	stomach
8	chr6:28110200-28116200	Weak transcription	Pancreas	Pancrea
9	chr6:28110200-28116200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:28110200-28120800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:28110600-28115600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:28110600-28115800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:28110600-28115800	Weak transcription	Left Ventricle	heart
14	chr6:28110600-28115800	Weak transcription	Thymus	Thymus
15	chr6:28110600-28116000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:28110600-28116000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:28110800-28113000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:28110800-28115600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:28111000-28113400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:28111000-28115400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:28111000-28115800	Weak transcription	Fetal Stomach	stomach
22	chr6:28111000-28116000	Weak transcription	HMEC	breast
23	chr6:28111000-28120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:28111200-28113000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:28111200-28113000	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:28111200-28113000	Weak transcription	NHDF-Ad	bronchial
27	chr6:28111200-28113200	Weak transcription	Fetal Lung	lung
28	chr6:28111200-28113400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:28111200-28113400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:28111200-28113400	Weak transcription	Fetal Kidney	kidney
31	chr6:28111200-28113400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:28111200-28113400	Weak transcription	NH-A	brain
33	chr6:28111200-28113400	Weak transcription	NHEK	skin
34	chr6:28111200-28115200	Weak transcription	Fetal Brain Female	brain
35	chr6:28111200-28115400	Weak transcription	NHLF	lung
36	chr6:28111200-28115600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:28111200-28115600	Weak transcription	Colonic Mucosa	Colon
38	chr6:28111200-28115600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:28111200-28115800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr6:28111200-28115800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:28111200-28115800	Weak transcription	Brain Angular Gyrus	brain
42	chr6:28111200-28116200	Weak transcription	Brain Anterior Caudate	brain
43	chr6:28111200-28116200	Weak transcription	Brain Substantia Nigra	brain
44	chr6:28111200-28116200	Weak transcription	Right Ventricle	heart
45	chr6:28111200-28116600	Weak transcription	Fetal Heart	heart
46	chr6:28111200-28119400	Weak transcription	Stomach Mucosa	stomach
47	chr6:28111200-28119600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:28111400-28113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:28111400-28113200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:28111400-28113600	Weak transcription	Stomach Smooth Muscle	stomach

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