Variant report

Variant	rs13437444
Chromosome Location	chr6:28070998-28070999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28070967..28073548-chr6:28102137..28104053,2	K562	blood:
2	chr6:28070629..28072252-chr6:28317178..28319554,2	K562	blood:
3	chr6:27807137..27809779-chr6:28070833..28072678,2	K562	blood:
4	chr6:28070926..28073280-chr6:28104096..28106207,2	K562	blood:
5	chr6:28069766..28072466-chr6:28092411..28094495,2	MCF-7	breast:
6	chr6:28070830..28074243-chr6:28303566..28305711,3	K562	blood:
7	chr6:28064931..28068898-chr6:28069677..28072744,5	K562	blood:
8	chr6:28047065..28050111-chr6:28070464..28074752,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000269293	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12055625	0.83[ASN][1000 genomes]
rs1321504	0.83[ASN][1000 genomes]
rs1321505	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13437126	0.97[ASN][1000 genomes]
rs16893735	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34130214	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34712084	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3734571	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3757188	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4713138	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4713139	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4713140	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs735765	0.90[ASN][1000 genomes]
rs8180562	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9348792	0.91[ASN][1000 genomes]
rs9357064	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9368560	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9368561	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9380064	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9393889	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9393902	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9461432	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9461439	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9468287	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9468300	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9468301	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs13437444	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs13437444	ZNF389	cis	brain	BrainEAC
rs13437444	ZNF389	cis	intralobular white matter	BrainEAC
rs13437444	AL022393.7	cis	Muscle Skeletal	GTEx
rs13437444	ZNF192P1	cis	Heart Left Ventricle	GTEx
rs13437444	ZNF389	cis	cerebellar cortex	BrainEAC
rs13437444	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs13437444	RP1-313I6.12	cis	Thyroid	GTEx
rs13437444	OR2B8P	cis	Thyroid	GTEx
rs13437444	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28058200-28072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28058800-28072000	Weak transcription	HMEC	breast
3	chr6:28059400-28072000	Weak transcription	Brain Substantia Nigra	brain
4	chr6:28061400-28072000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:28064600-28072200	Weak transcription	Placenta	Placenta
6	chr6:28067200-28072200	Weak transcription	Esophagus	oesophagus
7	chr6:28069400-28072200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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