Variant report

Variant	rs9296165
Chromosome Location	chr6:11795990-11795991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11774814..11777232-chr6:11795284..11797623,2	K562	blood:
2	chr6:11783514..11786582-chr6:11793568..11797099,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1195536	1.00[JPT][hapmap]
rs6457867	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6457868	1.00[JPT][hapmap]
rs7739436	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7743280	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7746016	1.00[JPT][hapmap]
rs7746309	1.00[JPT][hapmap]
rs7757263	1.00[JPT][hapmap]
rs7775964	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9296170	1.00[JPT][hapmap]
rs9296171	1.00[JPT][hapmap]
rs9296172	1.00[JPT][hapmap]
rs9470112	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs9470132	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs9470174	1.00[JPT][hapmap]
rs9470176	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9296165	SLC35B3	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11791800-11803400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:11792000-11804800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:11793400-11799000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:11793400-11803400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:11793400-11804800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:11793600-11798400	Weak transcription	HMEC	breast
7	chr6:11793600-11803400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:11793600-11804800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:11794400-11796200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:11794400-11796400	Enhancers	Placenta	Placenta
11	chr6:11794400-11799000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr6:11794600-11796000	Flanking Active TSS	Hela-S3	cervix
13	chr6:11794800-11802600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:11795400-11796000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:11795400-11797000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:11795400-11798600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:11795600-11796000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:11795600-11796000	Enhancers	Aorta	Aorta
19	chr6:11795600-11796000	Enhancers	HepG2	liver
20	chr6:11795600-11796000	Enhancers	NHDF-Ad	bronchial
21	chr6:11795600-11796400	Enhancers	Fetal Intestine Large	intestine
22	chr6:11795600-11796600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:11795600-11796600	Enhancers	Fetal Intestine Small	intestine
24	chr6:11795600-11797800	Weak transcription	Fetal Stomach	stomach
25	chr6:11795600-11798400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:11795600-11802200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:11795800-11797400	Weak transcription	Fetal Kidney	kidney
28	chr6:11795800-11798000	Enhancers	Ovary	ovary
29	chr6:11795800-11799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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