Variant report

Variant	rs9470176
Chromosome Location	chr6:11811382-11811383
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11811052..11812674-chr6:11998297..11999883,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIVEP1-4	chr6:11811076-11811481	XLOC_005171

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1033423	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1033424	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1195536	1.00[JPT][hapmap]
rs28360633	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457867	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457868	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912358	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724821	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73364036	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739436	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743280	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744077	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744396	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746016	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746309	1.00[JPT][hapmap]
rs7747022	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757263	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758760	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760480	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775964	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296165	1.00[JPT][hapmap]
rs9296170	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296171	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296172	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296173	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470112	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470132	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470168	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470174	1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470198	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470201	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470202	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470203	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470209	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470211	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9470212	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9470213	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9470214	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11807600-11816400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:11808000-11814400	Weak transcription	Fetal Thymus	thymus
3	chr6:11809200-11811400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:11809600-11811400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:11809600-11811400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:11809800-11811400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:11809800-11811400	Enhancers	Adipose Nuclei	Adipose
8	chr6:11809800-11811400	Enhancers	Ovary	ovary
9	chr6:11809800-11811400	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:11809800-11811600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:11809800-11811800	Enhancers	Fetal Muscle Leg	muscle
12	chr6:11809800-11812000	Enhancers	Fetal Lung	lung
13	chr6:11809800-11812000	Enhancers	Stomach Mucosa	stomach
14	chr6:11809800-11812200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:11809800-11812600	Enhancers	Fetal Heart	heart
16	chr6:11810000-11811400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:11810000-11811400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:11810200-11811400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:11810200-11811400	Enhancers	Fetal Kidney	kidney
20	chr6:11810200-11811400	Enhancers	K562	blood
21	chr6:11810200-11811800	Enhancers	Fetal Muscle Trunk	muscle
22	chr6:11810400-11811400	Enhancers	Gastric	stomach
23	chr6:11810400-11811400	Enhancers	Left Ventricle	heart
24	chr6:11810400-11811400	Enhancers	Right Atrium	heart
25	chr6:11810400-11811600	Enhancers	Brain Cingulate Gyrus	brain
26	chr6:11810400-11811600	Enhancers	Brain Hippocampus Middle	brain
27	chr6:11810400-11811800	Enhancers	Brain Angular Gyrus	brain
28	chr6:11810400-11812000	Enhancers	Fetal Brain Male	brain
29	chr6:11810600-11811400	Weak transcription	Spleen	Spleen
30	chr6:11810600-11812200	Enhancers	Brain Germinal Matrix	brain
31	chr6:11810600-11814000	Weak transcription	Fetal Intestine Small	intestine
32	chr6:11810800-11811400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:11810800-11813400	Weak transcription	Fetal Intestine Large	intestine
34	chr6:11810800-11814800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:11810800-11815000	Weak transcription	NHEK	skin
36	chr6:11810800-11815200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:11810800-11815400	Weak transcription	Fetal Stomach	stomach
38	chr6:11810800-11815600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:11811000-11811400	Flanking Active TSS	Brain Anterior Caudate	brain
40	chr6:11811000-11811400	Enhancers	A549	lung
41	chr6:11811000-11811400	Enhancers	HSMM	muscle
42	chr6:11811000-11811600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:11811000-11811600	Enhancers	Hela-S3	cervix
44	chr6:11811000-11811600	Enhancers	Osteobl	bone
45	chr6:11811000-11814400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr6:11811000-11814400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:11811200-11811400	Flanking Active TSS	HSMMtube	muscle
48	chr6:11811200-11811600	Active TSS	Fetal Brain Female	brain
49	chr6:11811200-11812000	Weak transcription	GM12878-XiMat	blood
50	chr6:11811200-11815000	Weak transcription	HMEC	breast

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