Variant report

Variant	rs6915289
Chromosome Location	chr6:11809838-11809839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1033423	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1033424	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28360633	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457867	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457868	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457869	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912358	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724821	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73364036	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739436	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740866	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743280	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744077	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744396	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746016	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747022	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757263	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758760	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760480	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763212	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775964	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296170	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296171	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296172	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296173	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470112	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470132	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470174	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470176	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470198	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470201	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470202	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9470203	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470209	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470211	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470212	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470213	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470214	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997137	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11796400-11810400	Weak transcription	Placenta	Placenta
2	chr6:11805000-11810400	Weak transcription	Right Atrium	heart
3	chr6:11805200-11810200	Weak transcription	NH-A	brain
4	chr6:11805400-11810200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:11806400-11810600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:11806600-11810200	Weak transcription	K562	blood
7	chr6:11807000-11810200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:11807000-11810200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:11807200-11811000	Weak transcription	Lung	lung
10	chr6:11807400-11810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:11807400-11810200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:11807400-11810400	Weak transcription	Spleen	Spleen
13	chr6:11807600-11810400	Weak transcription	Esophagus	oesophagus
14	chr6:11807600-11810400	Weak transcription	GM12878-XiMat	blood
15	chr6:11807600-11816400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:11808000-11814400	Weak transcription	Fetal Thymus	thymus
17	chr6:11809200-11810200	Enhancers	Hela-S3	cervix
18	chr6:11809200-11811400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:11809400-11810000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:11809400-11810400	Weak transcription	Fetal Brain Male	brain
21	chr6:11809400-11810800	Enhancers	NHEK	skin
22	chr6:11809400-11811200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:11809400-11811200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr6:11809400-11811200	Enhancers	HMEC	breast
25	chr6:11809600-11811400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:11809600-11811400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr6:11809800-11810000	Enhancers	Small Intestine	intestine
28	chr6:11809800-11810400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:11809800-11810400	Enhancers	HSMM	muscle
30	chr6:11809800-11810400	Enhancers	Osteobl	bone
31	chr6:11809800-11810600	Enhancers	Brain Substantia Nigra	brain
32	chr6:11809800-11810600	Enhancers	Colonic Mucosa	Colon
33	chr6:11809800-11810600	Enhancers	Fetal Intestine Small	intestine
34	chr6:11809800-11810600	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr6:11809800-11810800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:11809800-11810800	Enhancers	HSMMtube	muscle
37	chr6:11809800-11811000	Enhancers	Brain Anterior Caudate	brain
38	chr6:11809800-11811000	Enhancers	Colon Smooth Muscle	Colon
39	chr6:11809800-11811000	Enhancers	Duodenum Mucosa	Duodenum
40	chr6:11809800-11811000	Flanking Active TSS	A549	lung
41	chr6:11809800-11811000	Enhancers	NHLF	lung
42	chr6:11809800-11811200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:11809800-11811200	Enhancers	Right Ventricle	heart
44	chr6:11809800-11811200	Enhancers	NHDF-Ad	bronchial
45	chr6:11809800-11811400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:11809800-11811400	Enhancers	Adipose Nuclei	Adipose
47	chr6:11809800-11811400	Enhancers	Ovary	ovary
48	chr6:11809800-11811400	Enhancers	Stomach Smooth Muscle	stomach
49	chr6:11809800-11811600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:11809800-11811800	Enhancers	Fetal Muscle Leg	muscle

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