Variant report

Variant	rs73364036
Chromosome Location	chr6:11805722-11805723
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11804413..11807277-chr6:11809365..11811580,3	K562	blood:
2	chr6:11804065..11806313-chr6:11822779..11824702,2	MCF-7	breast:
3	chr6:11804488..11807450-chr6:12008603..12011488,3	MCF-7	breast:
4	chr6:11786886..11789714-chr6:11803820..11806163,2	K562	blood:
5	chr6:11801584..11803967-chr6:11804359..11806565,2	K562	blood:
6	chr6:11803840..11806433-chr6:11820029..11821651,2	K562	blood:

Variant related genes	Relation type
ENSG00000234427	Chromatin interaction
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1033423	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1033424	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28360633	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457867	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457868	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457869	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912358	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915289	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724821	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739436	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740866	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743280	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744077	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744396	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746016	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747022	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757263	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758760	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760480	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763212	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775964	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296170	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296171	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296172	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296173	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470112	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470132	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470168	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470174	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470176	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470198	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470201	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470202	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9470203	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470209	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470211	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470212	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470213	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470214	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997137	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11796400-11810400	Weak transcription	Placenta	Placenta
2	chr6:11799200-11809800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:11802200-11806400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr6:11802600-11806400	Enhancers	Fetal Intestine Small	intestine
5	chr6:11802800-11809200	Weak transcription	Hela-S3	cervix
6	chr6:11803400-11806000	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr6:11803400-11806600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:11803600-11806800	Weak transcription	Lung	lung
9	chr6:11803800-11807000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11803800-11809600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:11804000-11807200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:11804400-11806200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:11804400-11806400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:11804400-11806600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:11804400-11806600	Enhancers	Colonic Mucosa	Colon
16	chr6:11804400-11807000	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr6:11804600-11807000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:11804800-11806200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:11804800-11806600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:11804800-11806800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:11804800-11807000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:11805000-11806200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:11805000-11807200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr6:11805000-11807200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr6:11805000-11809800	Weak transcription	Fetal Lung	lung
26	chr6:11805000-11809800	Weak transcription	Osteobl	bone
27	chr6:11805000-11810400	Weak transcription	Right Atrium	heart
28	chr6:11805200-11805800	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:11805200-11806000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:11805200-11806000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:11805200-11806400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:11805200-11807600	Enhancers	Dnd41	blood
33	chr6:11805200-11810200	Weak transcription	NH-A	brain
34	chr6:11805400-11805800	Enhancers	K562	blood
35	chr6:11805400-11806800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:11805400-11807400	Flanking Active TSS	NHEK	skin
37	chr6:11805400-11807600	Enhancers	Esophagus	oesophagus
38	chr6:11805400-11807600	Flanking Active TSS	HMEC	breast
39	chr6:11805400-11809800	Weak transcription	HSMMtube	muscle
40	chr6:11805400-11810200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:11805600-11805800	Enhancers	Stomach Mucosa	stomach
42	chr6:11805600-11806400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:11805600-11806600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr6:11805600-11807000	Enhancers	Fetal Intestine Large	intestine
45	chr6:11805600-11808000	Enhancers	Fetal Thymus	thymus

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