Variant report

Variant	rs7775964
Chromosome Location	chr6:11807674-11807675
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:11805016-11807694	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11767330..11770016-chr6:11806756..11808382,2	MCF-7	breast:

Variant related genes	Relation type
ADTRP	TF binding region
ENSG00000234427	TF binding region
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1033423	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1033424	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1195536	1.00[JPT][hapmap]
rs28360633	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457867	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457868	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457869	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912358	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915289	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724821	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73364036	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739436	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740866	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743280	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744077	1.00[CEU][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744396	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746016	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746309	1.00[JPT][hapmap]
rs7747022	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757263	0.83[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758760	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760480	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763212	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296165	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9296170	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296171	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296172	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296173	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470112	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470132	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470174	1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470176	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470198	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470201	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470202	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9470203	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470209	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470211	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470212	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470213	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470214	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997137	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11796400-11810400	Weak transcription	Placenta	Placenta
2	chr6:11799200-11809800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:11802800-11809200	Weak transcription	Hela-S3	cervix
4	chr6:11803800-11809600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:11805000-11809800	Weak transcription	Fetal Lung	lung
6	chr6:11805000-11809800	Weak transcription	Osteobl	bone
7	chr6:11805000-11810400	Weak transcription	Right Atrium	heart
8	chr6:11805200-11810200	Weak transcription	NH-A	brain
9	chr6:11805400-11809800	Weak transcription	HSMMtube	muscle
10	chr6:11805400-11810200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:11805600-11808000	Enhancers	Fetal Thymus	thymus
12	chr6:11805800-11809800	Weak transcription	Stomach Mucosa	stomach
13	chr6:11806200-11808200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:11806200-11808600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:11806400-11809600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:11806400-11809800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:11806400-11809800	Weak transcription	Fetal Intestine Small	intestine
18	chr6:11806400-11810600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:11806600-11809800	Weak transcription	Colonic Mucosa	Colon
20	chr6:11806600-11810200	Weak transcription	K562	blood
21	chr6:11807000-11809800	Weak transcription	NHDF-Ad	bronchial
22	chr6:11807000-11810200	Weak transcription	Fetal Intestine Large	intestine
23	chr6:11807000-11810200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:11807200-11808000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:11807200-11811000	Weak transcription	Lung	lung
26	chr6:11807400-11808200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:11807400-11809800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:11807400-11810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:11807400-11810200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:11807400-11810400	Weak transcription	Spleen	Spleen
31	chr6:11807600-11808400	Enhancers	HMEC	breast
32	chr6:11807600-11809400	Weak transcription	NHEK	skin
33	chr6:11807600-11809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:11807600-11810400	Weak transcription	Esophagus	oesophagus
35	chr6:11807600-11810400	Weak transcription	GM12878-XiMat	blood
36	chr6:11807600-11816400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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