Variant report

Variant	rs9296751
Chromosome Location	chr6:54204347-54204348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10948816	0.81[AFR][1000 genomes]
rs12386529	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs13437568	1.00[YRI][hapmap]
rs9296752	1.00[YRI][hapmap]
rs9296753	1.00[YRI][hapmap]
rs9464056	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9464057	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9464059	1.00[YRI][hapmap]
rs9464061	0.87[AFR][1000 genomes]
rs9464078	0.81[AFR][1000 genomes]
rs9474813	1.00[YRI][hapmap]
rs9474816	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9474817	1.00[AFR][1000 genomes]
rs9474818	1.00[YRI][hapmap]
rs9474820	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9474822	0.87[AFR][1000 genomes]
rs9474823	1.00[YRI][hapmap]
rs9474824	1.00[YRI][hapmap]
rs9474826	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9474846	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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