Variant report
Variant | rs10948816 |
---|---|
Chromosome Location | chr6:54280765-54280766 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10085281 | 1.00[AMR][1000 genomes] |
rs10948818 | 1.00[AMR][1000 genomes] |
rs12386529 | 0.86[AFR][1000 genomes] |
rs7758800 | 1.00[AMR][1000 genomes] |
rs9464057 | 0.81[AFR][1000 genomes] |
rs9464061 | 0.93[AFR][1000 genomes] |
rs9464078 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9464082 | 1.00[AMR][1000 genomes] |
rs9464094 | 1.00[AMR][1000 genomes] |
rs9464099 | 1.00[AMR][1000 genomes] |
rs9474816 | 0.81[AFR][1000 genomes] |
rs9474817 | 0.81[AFR][1000 genomes] |
rs9474820 | 0.93[AFR][1000 genomes] |
rs9474822 | 0.93[AFR][1000 genomes] |
rs9474826 | 0.86[AFR][1000 genomes] |
rs9474846 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9474856 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9474857 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9474859 | 1.00[AMR][1000 genomes] |
rs9474864 | 1.00[AMR][1000 genomes] |
rs9474866 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9474885 | 1.00[AMR][1000 genomes] |
rs9474886 | 1.00[AMR][1000 genomes] |
rs9474889 | 1.00[AMR][1000 genomes] |
rs9474890 | 1.00[AMR][1000 genomes] |
rs9474891 | 1.00[AMR][1000 genomes] |
rs9474892 | 1.00[AMR][1000 genomes] |
rs9474893 | 1.00[AMR][1000 genomes] |
rs9474895 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1067663 | chr6:53796341-54449718 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | nsv529158 | chr6:53796341-54449718 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:54269400-54284400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |