Variant report

Variant	rs9474856
Chromosome Location	chr6:54284256-54284257
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10085281	1.00[AMR][1000 genomes]
rs10456174	1.00[JPT][hapmap]
rs10456681	1.00[JPT][hapmap]
rs10456682	1.00[JPT][hapmap]
rs10484642	1.00[JPT][hapmap]
rs10498797	1.00[JPT][hapmap]
rs10948812	1.00[JPT][hapmap]
rs10948816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10948818	1.00[AMR][1000 genomes]
rs12189890	1.00[JPT][hapmap]
rs12193891	1.00[JPT][hapmap]
rs12205456	1.00[JPT][hapmap]
rs12209457	1.00[JPT][hapmap]
rs12209701	1.00[JPT][hapmap]
rs12215711	1.00[JPT][hapmap]
rs12386529	0.93[AFR][1000 genomes]
rs12661397	1.00[JPT][hapmap]
rs12663327	1.00[JPT][hapmap]
rs12664425	1.00[JPT][hapmap]
rs7758800	1.00[AMR][1000 genomes]
rs9464061	0.86[AFR][1000 genomes]
rs9464078	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464082	1.00[AMR][1000 genomes]
rs9464094	1.00[AMR][1000 genomes]
rs9464099	1.00[AMR][1000 genomes]
rs9474820	0.86[AFR][1000 genomes]
rs9474822	0.86[AFR][1000 genomes]
rs9474826	0.93[AFR][1000 genomes]
rs9474846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474859	1.00[AMR][1000 genomes]
rs9474864	1.00[AMR][1000 genomes]
rs9474866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474885	1.00[AMR][1000 genomes]
rs9474886	1.00[AMR][1000 genomes]
rs9474889	1.00[AMR][1000 genomes]
rs9474890	1.00[AMR][1000 genomes]
rs9474891	1.00[AMR][1000 genomes]
rs9474892	1.00[AMR][1000 genomes]
rs9474893	1.00[AMR][1000 genomes]
rs9474895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54269400-54284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54283600-54285400	Enhancers	HUVEC	blood vessel
3	chr6:54284200-54284400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:54284200-54284400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:54284200-54284400	Enhancers	HMEC	breast
6	chr6:54284200-54285400	Enhancers	NHDF-Ad	bronchial
7	chr6:54284200-54285400	Enhancers	NHEK	skin
8	chr6:54284200-54285600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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