Variant report

Variant	rs9474846
Chromosome Location	chr6:54270596-54270597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10085281	1.00[AMR][1000 genomes]
rs10948816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10948818	1.00[AMR][1000 genomes]
rs12386529	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs13437568	1.00[YRI][hapmap]
rs7758800	1.00[AMR][1000 genomes]
rs9296751	1.00[YRI][hapmap]
rs9296752	1.00[YRI][hapmap]
rs9296753	1.00[YRI][hapmap]
rs9464056	1.00[YRI][hapmap]
rs9464057	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9464059	1.00[YRI][hapmap]
rs9464061	0.93[AFR][1000 genomes]
rs9464078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464082	1.00[AMR][1000 genomes]
rs9464094	1.00[AMR][1000 genomes]
rs9464099	1.00[AMR][1000 genomes]
rs9474813	1.00[YRI][hapmap]
rs9474816	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9474817	0.81[AFR][1000 genomes]
rs9474818	1.00[YRI][hapmap]
rs9474820	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9474822	0.93[AFR][1000 genomes]
rs9474823	1.00[YRI][hapmap]
rs9474824	1.00[YRI][hapmap]
rs9474826	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9474856	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474857	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474859	1.00[AMR][1000 genomes]
rs9474864	1.00[AMR][1000 genomes]
rs9474866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474885	1.00[AMR][1000 genomes]
rs9474886	1.00[AMR][1000 genomes]
rs9474889	1.00[AMR][1000 genomes]
rs9474890	1.00[AMR][1000 genomes]
rs9474891	1.00[AMR][1000 genomes]
rs9474892	1.00[AMR][1000 genomes]
rs9474893	1.00[AMR][1000 genomes]
rs9474895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54269400-54284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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