Variant report

Variant	rs9464082
Chromosome Location	chr6:54291789-54291790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10085281	1.00[AMR][1000 genomes]
rs10948816	1.00[AMR][1000 genomes]
rs10948818	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758800	1.00[AMR][1000 genomes]
rs9464078	1.00[AMR][1000 genomes]
rs9464094	1.00[AMR][1000 genomes]
rs9464099	1.00[AMR][1000 genomes]
rs9474846	1.00[AMR][1000 genomes]
rs9474856	1.00[AMR][1000 genomes]
rs9474857	1.00[AMR][1000 genomes]
rs9474859	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474864	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9474866	1.00[AMR][1000 genomes]
rs9474885	1.00[AMR][1000 genomes]
rs9474886	1.00[AMR][1000 genomes]
rs9474889	1.00[AMR][1000 genomes]
rs9474890	1.00[AMR][1000 genomes]
rs9474891	1.00[AMR][1000 genomes]
rs9474892	1.00[AMR][1000 genomes]
rs9474893	1.00[AMR][1000 genomes]
rs9474895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv528901	chr6:54290333-54337130	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54284600-54292000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54291200-54293800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:54291400-54292800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:54291600-54293200	Enhancers	GM12878-XiMat	blood
5	chr6:54291600-54293600	Enhancers	NHEK	skin
6	chr6:54291600-54296200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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