Variant report

Variant	rs9464099
Chromosome Location	chr6:54443587-54443588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54433346..54436074-chr6:54443412..54445005,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10085281	1.00[AMR][1000 genomes]
rs10948816	1.00[AMR][1000 genomes]
rs10948818	1.00[AMR][1000 genomes]
rs7758800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464078	1.00[AMR][1000 genomes]
rs9464082	1.00[AMR][1000 genomes]
rs9464094	1.00[AMR][1000 genomes]
rs9464110	1.00[AMR][1000 genomes]
rs9474846	1.00[AMR][1000 genomes]
rs9474856	1.00[AMR][1000 genomes]
rs9474857	1.00[AMR][1000 genomes]
rs9474859	1.00[AMR][1000 genomes]
rs9474864	1.00[AMR][1000 genomes]
rs9474866	1.00[AMR][1000 genomes]
rs9474885	1.00[AMR][1000 genomes]
rs9474886	1.00[AMR][1000 genomes]
rs9474889	1.00[AMR][1000 genomes]
rs9474890	1.00[AMR][1000 genomes]
rs9474891	1.00[AMR][1000 genomes]
rs9474892	1.00[AMR][1000 genomes]
rs9474893	1.00[AMR][1000 genomes]
rs9474895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv885889	chr6:54339930-54458991	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv885890	chr6:54339930-54460646	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv885892	chr6:54344853-54458991	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv885893	chr6:54344853-54460646	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv885894	chr6:54350048-54452797	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv885895	chr6:54350048-54456869	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv885896	chr6:54350048-54458991	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv885897	chr6:54350048-54460646	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv885898	chr6:54376524-54458991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv885899	chr6:54400791-54458991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54442000-54444800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:54442200-54443600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:54442200-54444800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:54442400-54443600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:54443000-54443600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:54443000-54444000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:54443200-54443600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:54443200-54444200	Enhancers	Osteobl	bone
9	chr6:54443400-54446600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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