Variant report
| Variant | rs9301418 |
|---|---|
| Chromosome Location | chr13:110539812-110539813 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11839673 | 1.00[AMR][1000 genomes] |
| rs12184873 | 1.00[AMR][1000 genomes] |
| rs1414437 | 1.00[AMR][1000 genomes] |
| rs1414438 | 1.00[AMR][1000 genomes] |
| rs7358838 | 1.00[AMR][1000 genomes] |
| rs8001265 | 1.00[AMR][1000 genomes] |
| rs9301422 | 1.00[AMR][1000 genomes] |
| rs9301423 | 1.00[AMR][1000 genomes] |
| rs9583445 | 1.00[AMR][1000 genomes] |
| rs9583447 | 1.00[AMR][1000 genomes] |
| rs9583448 | 1.00[AMR][1000 genomes] |
| rs9583450 | 1.00[AMR][1000 genomes] |
| rs9583451 | 1.00[AMR][1000 genomes] |
| rs9588015 | 1.00[AFR][1000 genomes] |
| rs9588029 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9588046 | 1.00[AMR][1000 genomes] |
| rs9588047 | 1.00[AMR][1000 genomes] |
| rs9588049 | 1.00[AMR][1000 genomes] |
| rs9588051 | 1.00[AMR][1000 genomes] |
| rs9588054 | 1.00[AMR][1000 genomes] |
| rs9588055 | 1.00[AMR][1000 genomes] |
| rs9588056 | 1.00[AMR][1000 genomes] |
| rs9588057 | 1.00[AMR][1000 genomes] |
| rs9588058 | 1.00[AMR][1000 genomes] |
| rs9588060 | 1.00[AMR][1000 genomes] |
| rs9588061 | 1.00[AMR][1000 genomes] |
| rs9989108 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832719 | chr13:110512259-110655883 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:110537400-110543200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
