Variant report

Variant	rs9588056
Chromosome Location	chr13:110641648-110641649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11839673	1.00[AMR][1000 genomes]
rs12184873	1.00[AMR][1000 genomes]
rs1414437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1414438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8001265	1.00[AMR][1000 genomes]
rs9301418	1.00[AMR][1000 genomes]
rs9301422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9301423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583445	1.00[AMR][1000 genomes]
rs9583447	1.00[AMR][1000 genomes]
rs9583448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583449	1.00[AFR][1000 genomes]
rs9583450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588029	1.00[AMR][1000 genomes]
rs9588046	1.00[AMR][1000 genomes]
rs9588047	1.00[AMR][1000 genomes]
rs9588049	1.00[AMR][1000 genomes]
rs9588051	1.00[AMR][1000 genomes]
rs9588054	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588055	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9989108	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110638400-110650800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110641000-110643000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:110641000-110643000	Enhancers	NHLF	lung
4	chr13:110641200-110642600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:110641200-110643000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:110641200-110643000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:110641600-110641800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:110641600-110642000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr13:110641600-110642000	Flanking Active TSS	NH-A	brain
10	chr13:110641600-110642000	Flanking Active TSS	Osteobl	bone
11	chr13:110641600-110642200	Enhancers	A549	lung
12	chr13:110641600-110642200	Enhancers	HMEC	breast
13	chr13:110641600-110642400	Enhancers	HSMM	muscle
14	chr13:110641600-110643000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr13:110641600-110643000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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