Variant report

Variant	rs9989108
Chromosome Location	chr13:110590665-110590666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11839065	0.82[AFR][1000 genomes]
rs11839673	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11843244	0.82[AFR][1000 genomes]
rs12184873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1414437	1.00[AMR][1000 genomes]
rs1414438	1.00[AMR][1000 genomes]
rs7358838	1.00[AMR][1000 genomes]
rs8001265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9301418	1.00[AMR][1000 genomes]
rs9301422	1.00[AMR][1000 genomes]
rs9301423	1.00[AMR][1000 genomes]
rs9583443	0.80[AFR][1000 genomes]
rs9583445	1.00[AMR][1000 genomes]
rs9583447	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583448	1.00[AMR][1000 genomes]
rs9583450	1.00[AMR][1000 genomes]
rs9583451	1.00[AMR][1000 genomes]
rs9588029	1.00[AMR][1000 genomes]
rs9588046	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588047	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588049	1.00[AMR][1000 genomes]
rs9588051	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588054	1.00[AMR][1000 genomes]
rs9588055	1.00[AMR][1000 genomes]
rs9588056	1.00[AMR][1000 genomes]
rs9588057	1.00[AMR][1000 genomes]
rs9588058	1.00[AMR][1000 genomes]
rs9588060	1.00[AMR][1000 genomes]
rs9588061	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110586200-110591200	Weak transcription	Brain Germinal Matrix	brain
2	chr13:110586200-110592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:110590000-110590800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr13:110590200-110591400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:110590400-110590800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:110590400-110590800	Enhancers	Left Ventricle	heart
7	chr13:110590400-110591000	Enhancers	Aorta	Aorta
8	chr13:110590400-110591200	Enhancers	Fetal Muscle Leg	muscle
9	chr13:110590400-110591400	Enhancers	Psoas Muscle	Psoas
10	chr13:110590400-110591400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr13:110590400-110592600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:110590600-110591000	Enhancers	NHEK	skin
13	chr13:110590600-110591400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:110590600-110591400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:110590600-110591400	Enhancers	Rectal Smooth Muscle	rectum
16	chr13:110590600-110591400	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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