Variant report

Variant	rs11839065
Chromosome Location	chr13:110597718-110597719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11839673	0.86[AFR][1000 genomes]
rs11841557	0.83[AMR][1000 genomes]
rs11843244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12184873	0.86[AFR][1000 genomes]
rs7981767	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8001154	0.83[AMR][1000 genomes]
rs8001265	0.86[AFR][1000 genomes]
rs8002659	0.83[AMR][1000 genomes]
rs9583443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583447	0.83[AFR][1000 genomes]
rs9588032	1.00[AMR][1000 genomes]
rs9588033	1.00[AMR][1000 genomes]
rs9588035	1.00[AMR][1000 genomes]
rs9588036	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588038	0.83[AMR][1000 genomes]
rs9588046	0.83[AFR][1000 genomes]
rs9588051	0.80[AFR][1000 genomes]
rs9989108	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110597000-110597800	ZNF genes & repeats	NHEK	skin
2	chr13:110597400-110597800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:110597400-110597800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
4	chr13:110597400-110597800	ZNF genes & repeats	HMEC	breast
5	chr13:110597400-110599000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:110597400-110599200	Enhancers	HSMM	muscle
7	chr13:110597400-110599400	Enhancers	HSMMtube	muscle
8	chr13:110597400-110600400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:110597600-110598600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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