Variant report

Variant	rs9588032
Chromosome Location	chr13:110570720-110570721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11839065	1.00[AMR][1000 genomes]
rs11841557	0.83[AMR][1000 genomes]
rs11843244	1.00[AMR][1000 genomes]
rs7981767	1.00[AMR][1000 genomes]
rs8001154	0.83[AMR][1000 genomes]
rs8002659	0.83[AMR][1000 genomes]
rs9583443	1.00[AMR][1000 genomes]
rs9588033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588035	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588036	1.00[AMR][1000 genomes]
rs9588038	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110566200-110572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110566800-110590400	Weak transcription	Aorta	Aorta
3	chr13:110569000-110571200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr13:110569400-110570800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:110569400-110573400	Enhancers	HSMM	muscle
6	chr13:110569600-110572400	Enhancers	HSMMtube	muscle
7	chr13:110569600-110573000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:110569800-110570800	Weak transcription	Adipose Nuclei	Adipose
9	chr13:110569800-110570800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:110570400-110571200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:110570400-110571200	Enhancers	Colon Smooth Muscle	Colon
12	chr13:110570400-110571400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr13:110570400-110571400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr13:110570600-110570800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr13:110570600-110570800	Enhancers	NHDF-Ad	bronchial
16	chr13:110570600-110571200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:110570600-110571400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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