Variant report

Variant	rs11841557
Chromosome Location	chr13:110584375-110584376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11839065	0.83[AMR][1000 genomes]
rs11842914	0.85[AMR][1000 genomes]
rs11843244	0.83[AMR][1000 genomes]
rs7981767	0.83[AMR][1000 genomes]
rs8001154	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8002659	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583442	0.85[AMR][1000 genomes]
rs9583443	0.83[AMR][1000 genomes]
rs9588032	0.83[AMR][1000 genomes]
rs9588033	0.83[AMR][1000 genomes]
rs9588035	0.83[AMR][1000 genomes]
rs9588036	0.83[AMR][1000 genomes]
rs9588037	0.85[AMR][1000 genomes]
rs9588038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110566800-110590400	Weak transcription	Aorta	Aorta
2	chr13:110571000-110586000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:110579800-110584400	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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