Variant report

Variant	rs9588033
Chromosome Location	chr13:110573198-110573199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11839065	1.00[AMR][1000 genomes]
rs11841557	0.83[AMR][1000 genomes]
rs11843244	1.00[AMR][1000 genomes]
rs7981767	1.00[AMR][1000 genomes]
rs8001154	0.83[AMR][1000 genomes]
rs8002659	0.83[AMR][1000 genomes]
rs9583443	1.00[AMR][1000 genomes]
rs9588032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588036	1.00[AMR][1000 genomes]
rs9588038	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110566800-110590400	Weak transcription	Aorta	Aorta
2	chr13:110569400-110573400	Enhancers	HSMM	muscle
3	chr13:110570800-110574800	Weak transcription	NHDF-Ad	bronchial
4	chr13:110571000-110586000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:110571200-110574600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:110572600-110574400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:110572600-110574600	Weak transcription	NHLF	lung
8	chr13:110572800-110574600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:110573000-110574000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:110573000-110574200	Weak transcription	NH-A	brain
11	chr13:110573000-110574400	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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