Variant report

Variant rs930366
Chromosome Location chr3:53876038-53876039
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53839600-53876600 Weak transcription HUES64 Cell Line embryonic stem cell
2 chr3:53846600-53879800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr3:53852400-53878200 Weak transcription Hela-S3 cervix
4 chr3:53853400-53877200 Weak transcription Colonic Mucosa Colon
5 chr3:53853800-53879000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr3:53854000-53879400 Weak transcription H9 Cell Line embryonic stem cell
7 chr3:53854200-53877400 Weak transcription Esophagus oesophagus
8 chr3:53854400-53876400 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr3:53856800-53879200 Weak transcription Ovary ovary
10 chr3:53857400-53876400 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr3:53857400-53876800 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr3:53858200-53876400 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr3:53858600-53876400 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr3:53859000-53876400 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr3:53861000-53876400 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr3:53865600-53879800 Weak transcription Aorta Aorta
17 chr3:53867400-53876200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr3:53867600-53876400 Weak transcription Brain Cingulate Gyrus brain
19 chr3:53867600-53876400 Weak transcription Brain Substantia Nigra brain
20 chr3:53869400-53876800 Weak transcription Right Ventricle heart
21 chr3:53869600-53879600 Weak transcription Right Atrium heart
22 chr3:53870200-53878600 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr3:53870800-53879600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr3:53871800-53876800 Weak transcription HMEC breast
25 chr3:53872800-53876200 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr3:53872800-53876400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr3:53872800-53877400 Weak transcription Small Intestine intestine
28 chr3:53873400-53876400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
29 chr3:53873800-53876400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr3:53874000-53876400 Weak transcription HUES48 Cell Line embryonic stem cell
31 chr3:53874800-53878000 Enhancers Fetal Intestine Large intestine
32 chr3:53875000-53876600 Transcr. at gene 5' and 3' HepG2 liver
33 chr3:53875200-53876400 Enhancers Liver Liver
34 chr3:53875200-53877400 Enhancers Breast Myoepithelial Primary Cells Breast
35 chr3:53875200-53877400 Enhancers Rectal Mucosa Donor 31 rectum
36 chr3:53875200-53878400 Enhancers Pancreas Pancrea
37 chr3:53875200-53878600 Enhancers Stomach Mucosa stomach
38 chr3:53875200-53879200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr3:53875200-53879400 Enhancers H1 Cell Line embryonic stem cell
40 chr3:53875400-53876400 Enhancers Duodenum Mucosa Duodenum
41 chr3:53875400-53876400 Enhancers GM12878-XiMat blood
42 chr3:53875400-53878600 Enhancers Brain Inferior Temporal Lobe brain
43 chr3:53875400-53878800 Enhancers Brain Hippocampus Middle brain
44 chr3:53875600-53876600 Weak transcription Lung lung
45 chr3:53875600-53878000 Weak transcription Gastric stomach
46 chr3:53875600-53879000 Enhancers Fetal Intestine Small intestine
47 chr3:53875600-53879200 Enhancers iPS-18 Cell Line embryonic stem cell
48 chr3:53875600-53879200 Enhancers Brain Anterior Caudate brain
49 chr3:53875800-53876200 Weak transcription Brain Angular Gyrus brain
50 chr3:53875800-53876200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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