Variant report

Variant	rs9311769
Chromosome Location	chr3:60639096-60639097
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28581589	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28856691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28867979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311768	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs9311771	0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9813580	1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814846	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820196	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9835901	1.00[EUR][1000 genomes]
rs9853124	0.85[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9863908	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9868814	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874458	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9311769	CRYM	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60630800-60639400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:60637800-60639600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:60638000-60639400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:60638000-60644400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:60638800-60639800	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links