Variant report

Variant	rs9874458
Chromosome Location	chr3:60646116-60646117
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28581589	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28856691	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28867979	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311769	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311771	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9813580	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9814846	1.00[EUR][1000 genomes]
rs9819311	0.82[AFR][1000 genomes]
rs9820196	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9835901	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9853124	1.00[EUR][1000 genomes]
rs9862122	0.96[AFR][1000 genomes]
rs9863908	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9868814	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60642600-60655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60645000-60646200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:60645600-60646200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:60645600-60646200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:60645600-60646200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:60645600-60646200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:60645600-60646200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:60645600-60646400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:60645800-60646200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:60645800-60646400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:60646000-60646200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:60646000-60646200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:60646000-60646400	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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