Variant report

Variant	rs9332306
Chromosome Location	chr13:48835645-48835646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17071686	1.00[CHD][hapmap]
rs3092863	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151432	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151495	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151545	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4151627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7320277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7327171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7329387	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7333971	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7982092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7982457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8000807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8002958	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332059	1.00[AFR][1000 genomes]
rs9332073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332279	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332286	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48808400-48843600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:48809600-48837400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:48810800-48841000	Weak transcription	Hela-S3	cervix
4	chr13:48811200-48843800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:48811600-48836800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:48825200-48837000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr13:48825400-48836800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr13:48825400-48841200	Strong transcription	Fetal Thymus	thymus
9	chr13:48825400-48844400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr13:48825800-48837400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr13:48826200-48840000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:48826400-48841200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr13:48826600-48837000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr13:48826800-48837400	Weak transcription	Right Atrium	heart
15	chr13:48826800-48842000	Weak transcription	K562	blood
16	chr13:48827400-48836600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:48827400-48836800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr13:48827400-48840200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr13:48827600-48837000	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr13:48827600-48838800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:48827600-48839000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr13:48827600-48839800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:48827600-48839800	Strong transcription	Dnd41	blood
24	chr13:48827600-48841000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr13:48827600-48843600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr13:48827800-48836600	Strong transcription	Primary B cells from cord blood	blood
27	chr13:48827800-48836600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr13:48827800-48837200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr13:48827800-48837600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr13:48827800-48838200	Strong transcription	Primary hematopoietic stem cells	blood
31	chr13:48827800-48839800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:48827800-48839800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr13:48827800-48840800	Strong transcription	Placenta	Placenta
34	chr13:48827800-48843800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:48828000-48838000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr13:48828000-48838600	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr13:48828000-48838800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr13:48828000-48840400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr13:48828200-48839000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr13:48828200-48840000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:48828400-48838400	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr13:48828600-48840200	Strong transcription	Adipose Nuclei	Adipose
43	chr13:48828600-48845800	Weak transcription	Stomach Mucosa	stomach
44	chr13:48828800-48837400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr13:48828800-48840800	Strong transcription	Liver	Liver
46	chr13:48829000-48839800	Strong transcription	Fetal Lung	lung
47	chr13:48829600-48836800	Weak transcription	Aorta	Aorta
48	chr13:48829600-48837400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr13:48829800-48837400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr13:48829800-48837400	Strong transcription	Primary T cells fromperipheralblood	blood

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