Variant report

Variant	rs9332521
Chromosome Location	chr1:169541962-169541963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169541824..169543359-chr1:169543755..169546590,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2228672	1.00[AMR][1000 genomes]
rs3917725	1.00[AMR][1000 genomes]
rs3917746	1.00[AMR][1000 genomes]
rs3917758	1.00[AMR][1000 genomes]
rs3917791	1.00[AMR][1000 genomes]
rs3917798	1.00[AMR][1000 genomes]
rs3917808	1.00[AMR][1000 genomes]
rs3917809	1.00[AMR][1000 genomes]
rs3917822	1.00[AMR][1000 genomes]
rs3917825	1.00[AMR][1000 genomes]
rs3917829	1.00[AMR][1000 genomes]
rs74121678	1.00[AMR][1000 genomes]
rs74121680	1.00[AMR][1000 genomes]
rs9332481	1.00[AMR][1000 genomes]
rs9332484	1.00[AMR][1000 genomes]
rs9332487	1.00[AMR][1000 genomes]
rs9332495	1.00[AMR][1000 genomes]
rs9332512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv872536	chr1:169538466-169547610	Active TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv872537	chr1:169538603-169547610	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
2	chr1:169533200-169551600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr1:169533400-169544600	Enhancers	Stomach Mucosa	stomach
4	chr1:169536400-169543600	Weak transcription	Left Ventricle	heart
5	chr1:169539400-169542000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr1:169539800-169543800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:169540200-169542000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:169540200-169542200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:169540200-169547200	Genic enhancers	HepG2	liver
10	chr1:169540400-169542000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:169540400-169542200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:169540600-169542000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:169540800-169542000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:169540800-169542000	Enhancers	Fetal Intestine Large	intestine
15	chr1:169540800-169542000	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr1:169540800-169543000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:169541000-169542000	Enhancers	Rectal Smooth Muscle	rectum
18	chr1:169541400-169543400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr1:169541600-169542000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr1:169541600-169543400	Enhancers	Liver	Liver
21	chr1:169541600-169550400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:169541800-169542200	Enhancers	Placenta	Placenta
23	chr1:169541800-169542200	Enhancers	Right Atrium	heart

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