Variant report

Variant	rs9341402
Chromosome Location	chr6:73790748-73790749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73784693..73787196-chr6:73789334..73790913,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10805970	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12195583	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1361721	0.84[AFR][1000 genomes]
rs1539346	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935531	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1935532	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2153841	0.84[ASN][1000 genomes]
rs2185772	0.88[ASN][1000 genomes]
rs2185773	0.88[ASN][1000 genomes]
rs2350364	0.88[ASN][1000 genomes]
rs2350365	0.88[ASN][1000 genomes]
rs2350366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350367	0.88[ASN][1000 genomes]
rs2350368	0.88[ASN][1000 genomes]
rs2882398	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4288171	0.88[ASN][1000 genomes]
rs4292489	0.88[ASN][1000 genomes]
rs4323278	0.88[ASN][1000 genomes]
rs4351213	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4398688	0.88[ASN][1000 genomes]
rs4579314	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4613780	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6453628	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6905309	0.88[ASN][1000 genomes]
rs6921049	0.85[AFR][1000 genomes]
rs7739433	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7741782	0.83[CEU][hapmap]
rs7761599	0.83[ASN][1000 genomes]
rs7764195	0.88[ASN][1000 genomes]
rs9343000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360631	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9442884	0.88[ASN][1000 genomes]
rs9446833	0.88[AFR][1000 genomes]
rs9446834	0.90[AFR][1000 genomes]
rs9446835	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73785000-73799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:73785600-73800200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:73786800-73795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:73787000-73796000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:73787200-73791600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:73787200-73795000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:73787200-73800800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:73787400-73791800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:73788400-73791000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:73788600-73791600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:73788800-73791000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:73789400-73791200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:73789800-73794600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:73789800-73795000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:73790000-73791000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:73790000-73791600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:73790000-73791800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:73790000-73792200	Weak transcription	A549	lung
22	chr6:73790000-73794600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:73790000-73794800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:73790000-73795000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:73790000-73795000	Weak transcription	GM12878-XiMat	blood
26	chr6:73790000-73798200	Weak transcription	NH-A	brain
27	chr6:73790200-73791600	Weak transcription	HSMMtube	muscle
28	chr6:73790600-73791800	Weak transcription	HSMM	muscle

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