Variant report

Variant	rs9446833
Chromosome Location	chr6:73789370-73789371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73784693..73787196-chr6:73789334..73790913,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12111515	0.90[CEU][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs1361721	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418412	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs1418413	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs1539346	0.83[ASW][hapmap]
rs16883262	1.00[JPT][hapmap]
rs58240570	0.90[EUR][1000 genomes]
rs6453626	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs6453627	0.90[CEU][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs67433517	0.90[EUR][1000 genomes]
rs68119906	0.90[EUR][1000 genomes]
rs6900769	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs6921049	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939209	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs7739433	0.83[ASW][hapmap]
rs7741782	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7742112	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7756518	0.90[CEU][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs9341402	0.88[AFR][1000 genomes]
rs9343000	0.83[ASW][hapmap]
rs9442881	0.80[CEU][hapmap]
rs9446834	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446835	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446836	0.89[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73778800-73790200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:73785000-73799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:73785600-73800200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:73785800-73789800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:73786200-73790000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:73786600-73789400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:73786600-73789400	Weak transcription	GM12878-XiMat	blood
11	chr6:73786800-73795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:73787000-73796000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:73787200-73789400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:73787200-73789600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:73787200-73791600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:73787200-73795000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:73787200-73800800	Weak transcription	Primary B cells from cord blood	blood
18	chr6:73787400-73791800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:73788400-73790600	Enhancers	HSMM	muscle
20	chr6:73788400-73791000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:73788600-73790000	Active TSS	A549	lung
22	chr6:73788600-73790000	Enhancers	Osteobl	bone
23	chr6:73788600-73791600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:73788800-73790000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:73788800-73790000	Enhancers	NHLF	lung
26	chr6:73788800-73790200	Enhancers	HSMMtube	muscle
27	chr6:73788800-73791000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:73789000-73789400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:73789000-73789400	Enhancers	NH-A	brain
30	chr6:73789000-73790000	Enhancers	HMEC	breast
31	chr6:73789200-73789400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:73789200-73789600	Enhancers	Fetal Heart	heart
33	chr6:73789200-73789800	Enhancers	NHEK	skin
34	chr6:73789200-73790000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:73789200-73790000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:73789200-73790000	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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