Variant report

Variant	rs7742112
Chromosome Location	chr6:73783648-73783649
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12111515	0.87[ASW][hapmap];0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12213933	1.00[JPT][hapmap]
rs1361721	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1418412	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1418413	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58240570	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6453626	0.90[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6453627	0.80[ASW][hapmap];0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67433517	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68119906	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6900769	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6921049	1.00[CEU][hapmap];0.93[GIH][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6939209	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7741782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756518	0.93[ASW][hapmap];0.90[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9442881	0.80[CEU][hapmap]
rs9446833	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9446834	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9446835	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9446836	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766000-73788400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73766400-73786000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73778800-73790200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:73782200-73784800	Enhancers	A549	lung
8	chr6:73782800-73784600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:73782800-73784600	Enhancers	Osteobl	bone
10	chr6:73783000-73783800	Enhancers	NH-A	brain
11	chr6:73783000-73785600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:73783200-73788800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:73783200-73789200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:73783600-73783800	Enhancers	HSMM	muscle

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