Variant report

Variant	rs6900769
Chromosome Location	chr6:73794979-73794980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73737865..73738687-chr6:73794476..73795161,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12111515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361721	0.90[EUR][1000 genomes]
rs1418412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58240570	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453627	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67433517	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68119906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921049	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs6939209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741782	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7742112	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7756518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351963	0.80[CEU][hapmap]
rs9360630	0.80[CEU][hapmap]
rs9442881	0.88[CEU][hapmap]
rs9446833	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs9446834	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs9446835	0.90[EUR][1000 genomes]
rs9446836	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73785000-73799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73785600-73800200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:73786800-73795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:73787000-73796000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:73787200-73795000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:73787200-73800800	Weak transcription	Primary B cells from cord blood	blood
9	chr6:73789800-73795000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:73790000-73795000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:73790000-73795000	Weak transcription	GM12878-XiMat	blood
12	chr6:73790000-73798200	Weak transcription	NH-A	brain
13	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:73791800-73795000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:73792000-73795000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:73792000-73795000	Weak transcription	HSMMtube	muscle
17	chr6:73792000-73795200	Weak transcription	HSMM	muscle
18	chr6:73792400-73795000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:73792400-73795000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:73792600-73795000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:73793400-73796800	Weak transcription	Aorta	Aorta
22	chr6:73793800-73795400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:73794000-73795000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:73794400-73796000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:73794400-73796200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:73794400-73796200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:73794600-73796000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:73794600-73796200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:73794800-73795000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:73794800-73795200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:73794800-73796200	Enhancers	HUES64 Cell Line	embryonic stem cell

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