Variant report

Variant	rs6453627
Chromosome Location	chr6:73796207-73796208
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12111515	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361721	0.90[EUR][1000 genomes]
rs1418412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58240570	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67433517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68119906	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921049	0.90[CEU][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs6939209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741782	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs7742112	0.80[ASW][hapmap];0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7756518	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351963	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs9360630	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs9442881	0.89[CEU][hapmap]
rs9446833	0.90[CEU][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs9446834	0.90[CEU][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs9446835	0.90[EUR][1000 genomes]
rs9446836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73785000-73799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73785600-73800200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:73787200-73800800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73790000-73798200	Weak transcription	NH-A	brain
7	chr6:73791000-73830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:73793400-73796800	Weak transcription	Aorta	Aorta
9	chr6:73795000-73798200	Enhancers	GM12878-XiMat	blood
10	chr6:73795400-73803800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:73796200-73798000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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