Variant report

Variant	rs6921049
Chromosome Location	chr6:73785937-73785938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73784693..73787196-chr6:73789334..73790913,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12111515	0.90[CEU][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs1361721	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418412	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs1418413	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs16883262	1.00[JPT][hapmap]
rs58240570	0.90[EUR][1000 genomes]
rs6453626	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs6453627	0.90[CEU][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs67433517	0.90[EUR][1000 genomes]
rs68119906	0.90[EUR][1000 genomes]
rs6900769	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs6939209	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs7741782	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7742112	1.00[CEU][hapmap];0.93[GIH][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7756518	0.90[CEU][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs9341402	0.85[AFR][1000 genomes]
rs9442881	0.80[CEU][hapmap]
rs9446833	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446834	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446835	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446836	0.89[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766000-73788400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73766400-73786000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73778800-73790200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:73783200-73788800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:73783200-73789200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:73783800-73789000	Weak transcription	NH-A	brain
10	chr6:73784400-73788400	Weak transcription	HSMM	muscle
11	chr6:73784600-73788200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:73784800-73788800	Weak transcription	NHLF	lung
13	chr6:73785000-73799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:73785600-73786000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:73785600-73786200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:73785600-73800200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:73785800-73786200	Enhancers	Osteobl	bone
18	chr6:73785800-73786600	Enhancers	A549	lung
19	chr6:73785800-73787000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr6:73785800-73787200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:73785800-73787200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:73785800-73787200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:73785800-73787600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:73785800-73789800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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